| acceptanceChain | NonDBayesCalibration | protected |
| acceptedFnVals | NonDBayesCalibration | protected |
| accepts_multiple_points() const | Iterator | virtual |
| active_set(const ActiveSet &set) | Iterator | inline |
| active_set() const | Iterator | inline |
| active_variable_mappings(const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2) | Iterator | inline |
| activeSet | Iterator | protected |
| adaptPosteriorRefine | NonDBayesCalibration | protected |
| algorithm_space_model() const | NonDBayesCalibration | inlineprotectedvirtual |
| all_responses() const | Analyzer | inlinevirtual |
| all_samples() | Analyzer | inlinevirtual |
| all_variables() | Analyzer | inlinevirtual |
| allHeaders | Analyzer | protected |
| allResponses | Analyzer | protected |
| allSamples | Analyzer | protected |
| allVariables | Analyzer | protected |
| Analyzer() | Analyzer | inlineprotected |
| Analyzer(ProblemDescDB &problem_db, Model &model) | Analyzer | protected |
| Analyzer(unsigned short method_name, Model &model) | Analyzer | protected |
| Analyzer(unsigned short method_name) | Analyzer | protected |
| archive_allocate_mappings() | NonD | protected |
| archive_allocate_pdf() | NonD | protected |
| archive_from_resp(size_t fn_index) | NonD | protected |
| archive_pdf(size_t fn_index) | NonD | protected |
| archive_to_resp(size_t fn_index) | NonD | protected |
| assign_rep(Iterator *iterator_rep, bool ref_count_incr=true) | Iterator | |
| augment_gradient_with_log_prior(VectorType1 &log_grad, const VectorType2 &vec) | NonDBayesCalibration | protected |
| augment_hessian_with_log_prior(MatrixType &log_hess, const VectorType &vec) | NonDBayesCalibration | protected |
| bestResponseArray | Iterator | protected |
| bestVariablesArray | Iterator | protected |
| bestVarsRespMap | Analyzer | protected |
| burnInSamples | NonDBayesCalibration | protected |
| calibrationData | NonDCalibration | protected |
| cdfFlag | NonD | protected |
| chainCycles | NonDBayesCalibration | protected |
| chainSamples | NonDBayesCalibration | protected |
| chainStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compact_mode() const | Analyzer | inlineprotectedvirtual |
| compactMode | Analyzer | protected |
| compute_col_means(RealMatrix &matrix, RealVector &avg_vals) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_col_stdevs(RealMatrix &matrix, RealVector &avg_vals, RealVector &std_devs) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_densities(const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false) | NonD | protected |
| compute_intervals(RealMatrix &acceptance_chain, RealMatrix &accepted_fn_vals) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_prediction_vals(RealMatrix &filtered_fn_vals, RealMatrix &PredVals, int num_filtered, size_t num_exp, size_t num_concatenated) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_responses(RealMatrix &samples, RealMatrix &responses) (defined in NonDWASABIBayesCalibration) | NonDWASABIBayesCalibration | |
| compute_statistics() | NonDBayesCalibration | protected |
| computedGenRelLevels | NonD | protected |
| computedPDFAbscissas | NonD | protected |
| computedPDFOrdinates | NonD | protected |
| computedProbLevels | NonD | protected |
| computedRelLevels | NonD | protected |
| computedRespLevels | NonD | protected |
| construct_lhs(Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE) | NonD | protected |
| convergence_tolerance(Real conv_tol) | Iterator | inline |
| convergence_tolerance() const | Iterator | inline |
| convergenceTol | Iterator | protected |
| core_run() | NonDWASABIBayesCalibration | protectedvirtual |
| dataDistCovariance | NonDWASABIBayesCalibration | protected |
| dataDistCovType | NonDWASABIBayesCalibration | protected |
| dataDistFilename | NonDWASABIBayesCalibration | protected |
| dataDistMeans | NonDWASABIBayesCalibration | protected |
| derived_free_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| derived_init_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| derived_set_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| distribution_parameter_derivatives(bool dist_param_derivs) | NonD | inline |
| emulatorType | NonDBayesCalibration | protected |
| epistemicStats | NonD | protected |
| estimate_partition_bounds() | Iterator | virtual |
| eval_tag_prefix(const String &eval_id_str) | Iterator | virtual |
| evaluate_parameter_sets(Model &model, bool log_resp_flag, bool log_best_flag) | Analyzer | protected |
| evaluatePosteriorDensity | NonDWASABIBayesCalibration | protected |
| expData | NonDCalibration | protected |
| export_chain() | NonDBayesCalibration | protected |
| export_posterior_samples_to_file(const std::string filename, const RealMatrix &posterior_data) const | NonDWASABIBayesCalibration | protected |
| exportFileFormat | NonDWASABIBayesCalibration | protected |
| exportMCMCFilename | NonDBayesCalibration | protected |
| exportMCMCFormat | NonDBayesCalibration | protected |
| exportPosteriorDensityFile | NonDWASABIBayesCalibration | protected |
| exportPosteriorSamplesFile | NonDWASABIBayesCalibration | protected |
| expStdDeviations | NonDCalibration | protected |
| extract_selected_posterior_samples(const std::vector< int > &points_to_keep, const RealMatrix &samples_for_posterior_eval, const RealVector &posterior_density, RealMatrix &posterior_data) const | NonDWASABIBayesCalibration | protected |
| filter_chain(RealMatrix &acceptance_chain, RealMatrix &filtered_chain) | NonDBayesCalibration | protected |
| filter_fnvals(RealMatrix &accepted_fn_vals, RealMatrix &filtered_fn_vals) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| filteredFnVals | NonDBayesCalibration | protected |
| filteredMCMCFormat (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| finalize_run() | NonD | inlineprotectedvirtual |
| finalStatistics | NonD | protected |
| fnStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| free_communicators(ParLevLIter pl_iter) | Iterator | |
| generate_system_seed() | NonD | protected |
| generateRandomPosteriorSamples | NonDWASABIBayesCalibration | protected |
| get_parameter_sets(Model &model) | Analyzer | protectedvirtual |
| get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, const RealMatrix &prior_chol_fact, RealSymMatrix &covariance, short output_lev) | NonDBayesCalibration | static |
| get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, RealSymMatrix &covariance) | NonDBayesCalibration | inlineprotected |
| gnewton_set_recast(const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set) | Iterator | protectedstatic |
| init_communicators(ParLevLIter pl_iter) | Iterator | |
| initial_points(const VariablesArray &pts) | Iterator | virtual |
| initial_points() const | Iterator | protectedvirtual |
| initialize_final_statistics() | NonD | protectedvirtual |
| initialize_final_statistics_gradients() | NonD | protected |
| initialize_graphics(int iterator_server_id=1) | Iterator | virtual |
| initialize_iterator(int job_index) | Iterator | virtual |
| initialize_level_mappings() | NonD | protected |
| initialize_model() | NonDBayesCalibration | protected |
| initialize_random_variable_correlations() | NonD | |
| initialize_random_variable_parameters() | NonD | |
| initialize_random_variable_transformation() | NonD | |
| initialize_random_variable_types() | NonD | |
| initialize_random_variable_types(short u_space_type) | NonD | |
| initialize_random_variables(short u_space_type) | NonD | |
| initialize_random_variables(const Pecos::ProbabilityTransformation &transform, bool deep_copy=false) | NonD | |
| initialize_response_covariance() | NonD | protectedvirtual |
| initialize_run() | NonD | inlineprotectedvirtual |
| invGammaAlphas | NonDBayesCalibration | protected |
| invGammaBetas | NonDBayesCalibration | protected |
| invGammaDists | NonDBayesCalibration | protected |
| is_null() const | Iterator | inline |
| iterated_model(const Model &model) | Iterator | inline |
| iterated_model() | Iterator | inline |
| iteratedModel | Iterator | protected |
| Iterator() | Iterator | |
| Iterator(ProblemDescDB &problem_db) | Iterator | |
| Iterator(ProblemDescDB &problem_db, Model &model) | Iterator | |
| Iterator(const String &method_string, Model &model) | Iterator | |
| Iterator(const Iterator &iterator) | Iterator | |
| Iterator(BaseConstructor, ProblemDescDB &problem_db) | Iterator | protected |
| Iterator(NoDBBaseConstructor, unsigned short method_name, Model &model) | Iterator | protected |
| Iterator(NoDBBaseConstructor, unsigned short method_name) | Iterator | protected |
| iterator_rep() const | Iterator | inline |
| log_likelihood(const RealVector &residuals, const RealVector &hyper_params) | NonDBayesCalibration | protected |
| log_prior_density(const VectorType &vec) | NonDBayesCalibration | |
| mapOptimizer | NonDBayesCalibration | protected |
| maxEvalConcurrency | Iterator | protected |
| maxFunctionEvals | Iterator | protected |
| maximum_evaluation_concurrency() const | Iterator | inline |
| maximum_evaluation_concurrency(int max_conc) | Iterator | inline |
| maxIterations | Iterator | protected |
| mcmcModel | NonDBayesCalibration | protected |
| method_enum_to_string(unsigned short method_name) const | Iterator | |
| method_id() const | Iterator | inline |
| method_name(unsigned short m_name) | Iterator | inline |
| method_name() const | Iterator | inline |
| method_recourse() | Iterator | virtual |
| method_string(const String &m_str) | Iterator | inline |
| method_string() const | Iterator | inline |
| method_string_to_enum(const String &method_name) const | Iterator | |
| methodName | Iterator | protected |
| methodPCIter | Iterator | protected |
| miPLIndex | NonD | protected |
| momentStats | NonD | protected |
| myModelLayers | Iterator | protected |
| natafTransform | NonD | protected |
| neg_log_post_resp_mapping(const Variables &model_vars, const Variables &nlpost_vars, const Response &model_resp, Response &nlpost_resp) | NonDBayesCalibration | protectedstatic |
| negLogPostModel | NonDBayesCalibration | protected |
| NonD(ProblemDescDB &problem_db, Model &model) | NonD | protected |
| NonD(unsigned short method_name, Model &model) | NonD | protected |
| NonD(unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds) | NonD | protected |
| NonDBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDBayesCalibration | |
| nonDBayesInstance | NonDBayesCalibration | protectedstatic |
| NonDCalibration(ProblemDescDB &problem_db, Model &model) | NonDCalibration | |
| nondInstance | NonD | protectedstatic |
| NonDWASABIBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDWASABIBayesCalibration | |
| num_final_solutions() const | Iterator | inline |
| num_final_solutions(size_t num_final) | Iterator | inline |
| num_samples() const | Analyzer | inlinevirtual |
| numAleatoryUncVars | NonD | protected |
| numBetaVars | NonD | protected |
| numBinomialVars | NonD | protected |
| numContAleatUncVars | NonD | protected |
| numContDesVars | NonD | protected |
| numContEpistUncVars | NonD | protected |
| numContIntervalVars | NonD | protected |
| numContinuousVars | Analyzer | protected |
| numContStateVars | NonD | protected |
| numDesignVars | NonD | protected |
| numDiscIntAleatUncVars | NonD | protected |
| numDiscIntDesVars | NonD | protected |
| numDiscIntEpistUncVars | NonD | protected |
| numDiscIntervalVars | NonD | protected |
| numDiscIntStateVars | NonD | protected |
| numDiscRealAleatUncVars | NonD | protected |
| numDiscRealDesVars | NonD | protected |
| numDiscRealEpistUncVars | NonD | protected |
| numDiscRealStateVars | NonD | protected |
| numDiscreteIntVars | Analyzer | protected |
| numDiscreteRealVars | Analyzer | protected |
| numDiscreteStringVars | Analyzer | protected |
| numDiscSetIntUncVars | NonD | protected |
| numDiscSetRealUncVars | NonD | protected |
| numDiscSetStringUncVars | NonD | protected |
| numDiscStringAleatUncVars | NonD | protected |
| numDiscStringDesVars | NonD | protected |
| numDiscStringEpistUncVars | NonD | protected |
| numDiscStringStateVars | NonD | protected |
| numEpistemicUncVars | NonD | protected |
| numExpConfigVars | NonDCalibration | protected |
| numExperiments | NonDCalibration | protected |
| numExponentialVars | NonD | protected |
| numFinalSolutions | Iterator | protected |
| numFrechetVars | NonD | protected |
| numFunctions | Analyzer | protected |
| numGammaVars | NonD | protected |
| numGeometricVars | NonD | protected |
| numGumbelVars | NonD | protected |
| numHistogramBinVars | NonD | protected |
| numHistogramPtIntVars | NonD | protected |
| numHistogramPtRealVars | NonD | protected |
| numHistogramPtStringVars | NonD | protected |
| numHyperGeomVars | NonD | protected |
| numHyperparams | NonDBayesCalibration | protected |
| numLognormalVars | NonD | protected |
| numLoguniformVars | NonD | protected |
| numLSqTerms | Analyzer | protected |
| numNegBinomialVars | NonD | protected |
| numNormalVars | NonD | protected |
| numObjFns | Analyzer | protected |
| numPoissonVars | NonD | protected |
| numStateVars | NonD | protected |
| numTotalCalibTerms | NonDCalibration | protected |
| numTriangularVars | NonD | protected |
| numUncertainVars | NonD | protected |
| numUniformVars | NonD | protected |
| numWeibullVars | NonD | protected |
| obsErrorMultiplierMode | NonDBayesCalibration | protected |
| operator=(const Iterator &iterator) | Iterator | |
| output_level(short out_lev) | Iterator | inline |
| output_level() const | Iterator | inline |
| outputLevel | Iterator | protected |
| pack_parameters_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
| pack_results_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
| parallel_configuration_iterator(ParConfigLIter pc_iter) | Iterator | inline |
| parallel_configuration_iterator() const | Iterator | inline |
| parallel_library() const | Iterator | inline |
| parallelLib | Iterator | protected |
| paramMaxs | NonDWASABIBayesCalibration | protected |
| paramMins | NonDWASABIBayesCalibration | protected |
| pdf_output() const | NonD | inline |
| pdf_output(bool output) | NonD | inline |
| pdfOutput | NonD | protected |
| post_input() | Iterator | virtual |
| post_run(std::ostream &s) | Analyzer | protectedvirtual |
| posteriorSamplesImportFile | NonDWASABIBayesCalibration | protected |
| posteriorSamplesImportFormat | NonDWASABIBayesCalibration | protected |
| pre_output() | Analyzer | protectedvirtual |
| pre_run() | Analyzer | protectedvirtual |
| predVals | NonDBayesCalibration | protected |
| prevNondInstance | NonD | protected |
| primaryACVarMapIndices | Iterator | protected |
| primaryADIVarMapIndices | Iterator | protected |
| primaryADRVarMapIndices | Iterator | protected |
| primaryADSVarMapIndices | Iterator | protected |
| print_densities(std::ostream &s) const | NonD | inlineprotected |
| print_densities(std::ostream &s, String qoi_type, const StringArray &pdf_labels) const | NonD | protected |
| print_filtered_tabular(RealMatrix &filteredChain, RealMatrix &filteredFnVals_for_intervals, RealMatrix &PredVals, int num_filtered, size_t num_exp) | NonDBayesCalibration | protected |
| print_intervals_file(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length, size_t aug_length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_intervals_screen(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_level_mappings(std::ostream &s) const | NonD | inline |
| print_level_mappings(std::ostream &s, String qoi_type, const StringArray &qoi_labels) const | NonD | |
| print_results(std::ostream &s) | NonDWASABIBayesCalibration | protectedvirtual |
| print_sobol_indices(std::ostream &s) const | Analyzer | protected |
| print_system_mappings(std::ostream &s) const | NonD | protected |
| prior_cholesky_factorization() | NonDBayesCalibration | protected |
| prior_density(const VectorType &vec) | NonDBayesCalibration | |
| prior_sample(Engine &rng, RealVector &prior_samples) | NonDBayesCalibration | |
| priorCovCholFactor | NonDBayesCalibration | protected |
| probDescDB | Iterator | protected |
| problem_description_db() const | Iterator | inline |
| problem_size(int &chain_num, int &cr_num, int &gen_num, int &pair_num, int &par_num) | NonDWASABIBayesCalibration | static |
| problem_value(std::string *chain_filename, std::string *gr_filename, double &gr_threshold, int &jumpstep, double limits[], int par_num, int &printstep, std::string *restart_read_filename, std::string *restart_write_filename) | NonDWASABIBayesCalibration | static |
| proposalCovarData | NonDBayesCalibration | protected |
| proposalCovarFilename | NonDBayesCalibration | protected |
| proposalCovarInputType | NonDBayesCalibration | protected |
| proposalCovarType | NonDBayesCalibration | protected |
| randomSeed | NonDBayesCalibration | protected |
| read_variables_responses(int num_evals, size_t num_vars) | Analyzer | protected |
| requested_levels(const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output) | NonD | |
| requestedGenRelLevels | NonD | protected |
| requestedProbLevels | NonD | protected |
| requestedRelLevels | NonD | protected |
| requestedRespLevels | NonD | protected |
| reset() | Iterator | virtual |
| residualModel | NonDBayesCalibration | protected |
| resize() | NonDCalibration | virtual |
| resize_communicators(ParLevLIter pl_iter, bool reinit_comms) | Iterator | |
| resp_x_to_u_mapping(const Variables &x_vars, const Variables &u_vars, const Response &x_response, Response &u_response) | NonD | protectedstatic |
| respLevelTarget | NonD | protected |
| respLevelTargetReduce | NonD | protected |
| response_array_results() | Analyzer | inlineprotectedvirtual |
| response_results() const | NonD | inlineprotectedvirtual |
| response_results_active_set(const ActiveSet &set) | NonD | inlineprotectedvirtual |
| resultsDB | Iterator | protected |
| resultsNames | Iterator | protected |
| returns_multiple_points() const | Analyzer | inlineprotectedvirtual |
| rnumGenerator | NonDWASABIBayesCalibration | protected |
| run(ParLevLIter pl_iter) | Iterator | |
| run() | Iterator | |
| run_identifier() const | Iterator | protected |
| sample_to_variables(const Real *sample_vars, Variables &vars) | Analyzer | protectedvirtual |
| samples_to_variables_array(const RealMatrix &sample_matrix, VariablesArray &vars_array) | Analyzer | protected |
| sampling_increment() | Iterator | virtual |
| sampling_reference(int samples_ref) | Iterator | virtual |
| sampling_reset(int min_samples, bool all_data_flag, bool stats_flag) | Iterator | virtual |
| sampling_scheme() const | Iterator | virtual |
| secondaryACVarMapTargets | Iterator | protected |
| secondaryADIVarMapTargets | Iterator | protected |
| secondaryADRVarMapTargets | Iterator | protected |
| secondaryADSVarMapTargets | Iterator | protected |
| set_communicators(ParLevLIter pl_iter) | Iterator | |
| set_configuration_vars(Model &model, const RealVector &x) | NonDCalibration | protected |
| set_u_to_x_mapping(const Variables &u_vars, const ActiveSet &u_set, ActiveSet &x_set) | NonD | protectedstatic |
| size() | NonD | protected |
| standardizedSpace | NonDBayesCalibration | protected |
| stochExpIterator | NonDBayesCalibration | protected |
| sub_iterator_flag(bool si_flag) | Iterator | |
| subIteratorFlag | Iterator | protected |
| submethod_enum_to_string(unsigned short submethod_name) const | Iterator | |
| subSamplingPeriod | NonDBayesCalibration | protected |
| summary_output(bool summary_output_flag) | Iterator | inline |
| summaryOutputFlag | Iterator | protected |
| totalLevelRequests | NonD | protected |
| transform_correlations() | NonD | inline |
| transform_model(Model &x_model, Model &u_model, bool truncated_bounds=false, Real bound=10.) | NonD | protected |
| unpack_parameters_buffer(MPIUnpackBuffer &recv_buffer) | Iterator | virtual |
| unpack_parameters_initialize(MPIUnpackBuffer &recv_buffer) | Iterator | virtual |
| unpack_results_buffer(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
| update_aleatory_final_statistics() | NonD | protected |
| update_final_statistics() | NonD | protectedvirtual |
| update_from_model(const Model &model) | Analyzer | protectedvirtual |
| update_local_results(int job_index) | Iterator | virtual |
| update_model_from_sample(Model &model, const Real *sample_vars) | Analyzer | protectedvirtual |
| update_model_from_variables(Model &model, const Variables &vars) | Analyzer | protectedvirtual |
| update_system_final_statistics() | NonD | protected |
| update_system_final_statistics_gradients() | NonD | protected |
| uses_method() const | Iterator | virtual |
| variable_transformation() | NonD | inline |
| variables_array_results() | Analyzer | inlineprotectedvirtual |
| variables_array_to_samples(const VariablesArray &vars_array, RealMatrix &sample_matrix) | Analyzer | protected |
| variables_results() const | Analyzer | inlineprotectedvirtual |
| variables_to_sample(const Variables &vars, Real *sample_c_vars) | Analyzer | protectedvirtual |
| variance_based_decomp(int ncont, int ndiscint, int ndiscreal, int num_samples) | Analyzer | protected |
| varianceTypesRead | NonDCalibration | protected |
| vars_u_to_x_mapping(const Variables &u_vars, Variables &x_vars) | NonD | inlineprotectedstatic |
| vars_x_to_u_mapping(const Variables &x_vars, Variables &u_vars) | NonD | inlineprotectedstatic |
| vary_pattern(bool pattern_flag) | Analyzer | virtual |
| verify_correlation_support(short u_space_type) | NonD | |
| ~Analyzer() | Analyzer | inlineprotected |
| ~Iterator() | Iterator | virtual |
| ~NonD() | NonD | inlineprotected |
| ~NonDBayesCalibration() | NonDBayesCalibration | |
| ~NonDCalibration() | NonDCalibration | |
| ~NonDWASABIBayesCalibration() | NonDWASABIBayesCalibration | |
1.8.4
