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NonDWASABIBayesCalibration Member List

This is the complete list of members for NonDWASABIBayesCalibration, including all inherited members.

acceptanceChainNonDBayesCalibrationprotected
acceptedFnValsNonDBayesCalibrationprotected
accepts_multiple_points() const Iteratorvirtual
active_set(const ActiveSet &set)Iteratorinline
active_set() const Iteratorinline
active_variable_mappings(const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2)Iteratorinline
activeSetIteratorprotected
adaptPosteriorRefineNonDBayesCalibrationprotected
algorithm_space_model() const NonDBayesCalibrationinlineprotectedvirtual
all_responses() const Analyzerinlinevirtual
all_samples()Analyzerinlinevirtual
all_variables()Analyzerinlinevirtual
allHeadersAnalyzerprotected
allResponsesAnalyzerprotected
allSamplesAnalyzerprotected
allVariablesAnalyzerprotected
Analyzer()Analyzerinlineprotected
Analyzer(ProblemDescDB &problem_db, Model &model)Analyzerprotected
Analyzer(unsigned short method_name, Model &model)Analyzerprotected
Analyzer(unsigned short method_name)Analyzerprotected
archive_allocate_mappings()NonDprotected
archive_allocate_pdf()NonDprotected
archive_from_resp(size_t fn_index)NonDprotected
archive_pdf(size_t fn_index)NonDprotected
archive_to_resp(size_t fn_index)NonDprotected
assign_rep(Iterator *iterator_rep, bool ref_count_incr=true)Iterator
augment_gradient_with_log_prior(VectorType1 &log_grad, const VectorType2 &vec)NonDBayesCalibrationprotected
augment_hessian_with_log_prior(MatrixType &log_hess, const VectorType &vec)NonDBayesCalibrationprotected
bestResponseArrayIteratorprotected
bestVariablesArrayIteratorprotected
bestVarsRespMapAnalyzerprotected
burnInSamplesNonDBayesCalibrationprotected
calibrationDataNonDCalibrationprotected
cdfFlagNonDprotected
chainCyclesNonDBayesCalibrationprotected
chainSamplesNonDBayesCalibrationprotected
chainStats (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
compact_mode() const Analyzerinlineprotectedvirtual
compactModeAnalyzerprotected
compute_col_means(RealMatrix &matrix, RealVector &avg_vals) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
compute_col_stdevs(RealMatrix &matrix, RealVector &avg_vals, RealVector &std_devs) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
compute_densities(const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false)NonDprotected
compute_intervals(RealMatrix &acceptance_chain, RealMatrix &accepted_fn_vals) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
compute_prediction_vals(RealMatrix &filtered_fn_vals, RealMatrix &PredVals, int num_filtered, size_t num_exp, size_t num_concatenated) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
compute_responses(RealMatrix &samples, RealMatrix &responses) (defined in NonDWASABIBayesCalibration)NonDWASABIBayesCalibration
compute_statistics()NonDBayesCalibrationprotected
computedGenRelLevelsNonDprotected
computedPDFAbscissasNonDprotected
computedPDFOrdinatesNonDprotected
computedProbLevelsNonDprotected
computedRelLevelsNonDprotected
computedRespLevelsNonDprotected
construct_lhs(Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE)NonDprotected
convergence_tolerance(Real conv_tol)Iteratorinline
convergence_tolerance() const Iteratorinline
convergenceTolIteratorprotected
core_run()NonDWASABIBayesCalibrationprotectedvirtual
dataDistCovarianceNonDWASABIBayesCalibrationprotected
dataDistCovTypeNonDWASABIBayesCalibrationprotected
dataDistFilenameNonDWASABIBayesCalibrationprotected
dataDistMeansNonDWASABIBayesCalibrationprotected
derived_free_communicators(ParLevLIter pl_iter)NonDBayesCalibrationprotectedvirtual
derived_init_communicators(ParLevLIter pl_iter)NonDBayesCalibrationprotectedvirtual
derived_set_communicators(ParLevLIter pl_iter)NonDBayesCalibrationprotectedvirtual
distribution_parameter_derivatives(bool dist_param_derivs)NonDinline
emulatorTypeNonDBayesCalibrationprotected
epistemicStatsNonDprotected
estimate_partition_bounds()Iteratorvirtual
eval_tag_prefix(const String &eval_id_str)Iteratorvirtual
evaluate_parameter_sets(Model &model, bool log_resp_flag, bool log_best_flag)Analyzerprotected
evaluatePosteriorDensityNonDWASABIBayesCalibrationprotected
expDataNonDCalibrationprotected
export_chain()NonDBayesCalibrationprotected
export_posterior_samples_to_file(const std::string filename, const RealMatrix &posterior_data) const NonDWASABIBayesCalibrationprotected
exportFileFormatNonDWASABIBayesCalibrationprotected
exportMCMCFilenameNonDBayesCalibrationprotected
exportMCMCFormatNonDBayesCalibrationprotected
exportPosteriorDensityFileNonDWASABIBayesCalibrationprotected
exportPosteriorSamplesFileNonDWASABIBayesCalibrationprotected
expStdDeviationsNonDCalibrationprotected
extract_selected_posterior_samples(const std::vector< int > &points_to_keep, const RealMatrix &samples_for_posterior_eval, const RealVector &posterior_density, RealMatrix &posterior_data) const NonDWASABIBayesCalibrationprotected
filter_chain(RealMatrix &acceptance_chain, RealMatrix &filtered_chain)NonDBayesCalibrationprotected
filter_fnvals(RealMatrix &accepted_fn_vals, RealMatrix &filtered_fn_vals) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
filteredFnValsNonDBayesCalibrationprotected
filteredMCMCFormat (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
finalize_run()NonDinlineprotectedvirtual
finalStatisticsNonDprotected
fnStats (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
free_communicators(ParLevLIter pl_iter)Iterator
generate_system_seed()NonDprotected
generateRandomPosteriorSamplesNonDWASABIBayesCalibrationprotected
get_parameter_sets(Model &model)Analyzerprotectedvirtual
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, const RealMatrix &prior_chol_fact, RealSymMatrix &covariance, short output_lev)NonDBayesCalibrationstatic
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, RealSymMatrix &covariance)NonDBayesCalibrationinlineprotected
gnewton_set_recast(const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set)Iteratorprotectedstatic
init_communicators(ParLevLIter pl_iter)Iterator
initial_points(const VariablesArray &pts)Iteratorvirtual
initial_points() const Iteratorprotectedvirtual
initialize_final_statistics()NonDprotectedvirtual
initialize_final_statistics_gradients()NonDprotected
initialize_graphics(int iterator_server_id=1)Iteratorvirtual
initialize_iterator(int job_index)Iteratorvirtual
initialize_level_mappings()NonDprotected
initialize_model()NonDBayesCalibrationprotected
initialize_random_variable_correlations()NonD
initialize_random_variable_parameters()NonD
initialize_random_variable_transformation()NonD
initialize_random_variable_types()NonD
initialize_random_variable_types(short u_space_type)NonD
initialize_random_variables(short u_space_type)NonD
initialize_random_variables(const Pecos::ProbabilityTransformation &transform, bool deep_copy=false)NonD
initialize_response_covariance()NonDprotectedvirtual
initialize_run()NonDinlineprotectedvirtual
invGammaAlphasNonDBayesCalibrationprotected
invGammaBetasNonDBayesCalibrationprotected
invGammaDistsNonDBayesCalibrationprotected
is_null() const Iteratorinline
iterated_model(const Model &model)Iteratorinline
iterated_model()Iteratorinline
iteratedModelIteratorprotected
Iterator()Iterator
Iterator(ProblemDescDB &problem_db)Iterator
Iterator(ProblemDescDB &problem_db, Model &model)Iterator
Iterator(const String &method_string, Model &model)Iterator
Iterator(const Iterator &iterator)Iterator
Iterator(BaseConstructor, ProblemDescDB &problem_db)Iteratorprotected
Iterator(NoDBBaseConstructor, unsigned short method_name, Model &model)Iteratorprotected
Iterator(NoDBBaseConstructor, unsigned short method_name)Iteratorprotected
iterator_rep() const Iteratorinline
log_likelihood(const RealVector &residuals, const RealVector &hyper_params)NonDBayesCalibrationprotected
log_prior_density(const VectorType &vec)NonDBayesCalibration
mapOptimizerNonDBayesCalibrationprotected
maxEvalConcurrencyIteratorprotected
maxFunctionEvalsIteratorprotected
maximum_evaluation_concurrency() const Iteratorinline
maximum_evaluation_concurrency(int max_conc)Iteratorinline
maxIterationsIteratorprotected
mcmcModelNonDBayesCalibrationprotected
method_enum_to_string(unsigned short method_name) const Iterator
method_id() const Iteratorinline
method_name(unsigned short m_name)Iteratorinline
method_name() const Iteratorinline
method_recourse()Iteratorvirtual
method_string(const String &m_str)Iteratorinline
method_string() const Iteratorinline
method_string_to_enum(const String &method_name) const Iterator
methodNameIteratorprotected
methodPCIterIteratorprotected
miPLIndexNonDprotected
momentStatsNonDprotected
myModelLayersIteratorprotected
natafTransformNonDprotected
neg_log_post_resp_mapping(const Variables &model_vars, const Variables &nlpost_vars, const Response &model_resp, Response &nlpost_resp)NonDBayesCalibrationprotectedstatic
negLogPostModelNonDBayesCalibrationprotected
NonD(ProblemDescDB &problem_db, Model &model)NonDprotected
NonD(unsigned short method_name, Model &model)NonDprotected
NonD(unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds)NonDprotected
NonDBayesCalibration(ProblemDescDB &problem_db, Model &model)NonDBayesCalibration
nonDBayesInstanceNonDBayesCalibrationprotectedstatic
NonDCalibration(ProblemDescDB &problem_db, Model &model)NonDCalibration
nondInstanceNonDprotectedstatic
NonDWASABIBayesCalibration(ProblemDescDB &problem_db, Model &model)NonDWASABIBayesCalibration
num_final_solutions() const Iteratorinline
num_final_solutions(size_t num_final)Iteratorinline
num_samples() const Analyzerinlinevirtual
numAleatoryUncVarsNonDprotected
numBetaVarsNonDprotected
numBinomialVarsNonDprotected
numContAleatUncVarsNonDprotected
numContDesVarsNonDprotected
numContEpistUncVarsNonDprotected
numContIntervalVarsNonDprotected
numContinuousVarsAnalyzerprotected
numContStateVarsNonDprotected
numDesignVarsNonDprotected
numDiscIntAleatUncVarsNonDprotected
numDiscIntDesVarsNonDprotected
numDiscIntEpistUncVarsNonDprotected
numDiscIntervalVarsNonDprotected
numDiscIntStateVarsNonDprotected
numDiscRealAleatUncVarsNonDprotected
numDiscRealDesVarsNonDprotected
numDiscRealEpistUncVarsNonDprotected
numDiscRealStateVarsNonDprotected
numDiscreteIntVarsAnalyzerprotected
numDiscreteRealVarsAnalyzerprotected
numDiscreteStringVarsAnalyzerprotected
numDiscSetIntUncVarsNonDprotected
numDiscSetRealUncVarsNonDprotected
numDiscSetStringUncVarsNonDprotected
numDiscStringAleatUncVarsNonDprotected
numDiscStringDesVarsNonDprotected
numDiscStringEpistUncVarsNonDprotected
numDiscStringStateVarsNonDprotected
numEpistemicUncVarsNonDprotected
numExpConfigVarsNonDCalibrationprotected
numExperimentsNonDCalibrationprotected
numExponentialVarsNonDprotected
numFinalSolutionsIteratorprotected
numFrechetVarsNonDprotected
numFunctionsAnalyzerprotected
numGammaVarsNonDprotected
numGeometricVarsNonDprotected
numGumbelVarsNonDprotected
numHistogramBinVarsNonDprotected
numHistogramPtIntVarsNonDprotected
numHistogramPtRealVarsNonDprotected
numHistogramPtStringVarsNonDprotected
numHyperGeomVarsNonDprotected
numHyperparamsNonDBayesCalibrationprotected
numLognormalVarsNonDprotected
numLoguniformVarsNonDprotected
numLSqTermsAnalyzerprotected
numNegBinomialVarsNonDprotected
numNormalVarsNonDprotected
numObjFnsAnalyzerprotected
numPoissonVarsNonDprotected
numStateVarsNonDprotected
numTotalCalibTermsNonDCalibrationprotected
numTriangularVarsNonDprotected
numUncertainVarsNonDprotected
numUniformVarsNonDprotected
numWeibullVarsNonDprotected
obsErrorMultiplierModeNonDBayesCalibrationprotected
operator=(const Iterator &iterator)Iterator
output_level(short out_lev)Iteratorinline
output_level() const Iteratorinline
outputLevelIteratorprotected
pack_parameters_buffer(MPIPackBuffer &send_buffer, int job_index)Iteratorvirtual
pack_results_buffer(MPIPackBuffer &send_buffer, int job_index)Iteratorvirtual
parallel_configuration_iterator(ParConfigLIter pc_iter)Iteratorinline
parallel_configuration_iterator() const Iteratorinline
parallel_library() const Iteratorinline
parallelLibIteratorprotected
paramMaxsNonDWASABIBayesCalibrationprotected
paramMinsNonDWASABIBayesCalibrationprotected
pdf_output() const NonDinline
pdf_output(bool output)NonDinline
pdfOutputNonDprotected
post_input()Iteratorvirtual
post_run(std::ostream &s)Analyzerprotectedvirtual
posteriorSamplesImportFileNonDWASABIBayesCalibrationprotected
posteriorSamplesImportFormatNonDWASABIBayesCalibrationprotected
pre_output()Analyzerprotectedvirtual
pre_run()Analyzerprotectedvirtual
predValsNonDBayesCalibrationprotected
prevNondInstanceNonDprotected
primaryACVarMapIndicesIteratorprotected
primaryADIVarMapIndicesIteratorprotected
primaryADRVarMapIndicesIteratorprotected
primaryADSVarMapIndicesIteratorprotected
print_densities(std::ostream &s) const NonDinlineprotected
print_densities(std::ostream &s, String qoi_type, const StringArray &pdf_labels) const NonDprotected
print_filtered_tabular(RealMatrix &filteredChain, RealMatrix &filteredFnVals_for_intervals, RealMatrix &PredVals, int num_filtered, size_t num_exp)NonDBayesCalibrationprotected
print_intervals_file(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length, size_t aug_length) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
print_intervals_screen(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length) (defined in NonDBayesCalibration)NonDBayesCalibrationprotected
print_level_mappings(std::ostream &s) const NonDinline
print_level_mappings(std::ostream &s, String qoi_type, const StringArray &qoi_labels) const NonD
print_results(std::ostream &s)NonDWASABIBayesCalibrationprotectedvirtual
print_sobol_indices(std::ostream &s) const Analyzerprotected
print_system_mappings(std::ostream &s) const NonDprotected
prior_cholesky_factorization()NonDBayesCalibrationprotected
prior_density(const VectorType &vec)NonDBayesCalibration
prior_sample(Engine &rng, RealVector &prior_samples)NonDBayesCalibration
priorCovCholFactorNonDBayesCalibrationprotected
probDescDBIteratorprotected
problem_description_db() const Iteratorinline
problem_size(int &chain_num, int &cr_num, int &gen_num, int &pair_num, int &par_num)NonDWASABIBayesCalibrationstatic
problem_value(std::string *chain_filename, std::string *gr_filename, double &gr_threshold, int &jumpstep, double limits[], int par_num, int &printstep, std::string *restart_read_filename, std::string *restart_write_filename)NonDWASABIBayesCalibrationstatic
proposalCovarDataNonDBayesCalibrationprotected
proposalCovarFilenameNonDBayesCalibrationprotected
proposalCovarInputTypeNonDBayesCalibrationprotected
proposalCovarTypeNonDBayesCalibrationprotected
randomSeedNonDBayesCalibrationprotected
read_variables_responses(int num_evals, size_t num_vars)Analyzerprotected
requested_levels(const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output)NonD
requestedGenRelLevelsNonDprotected
requestedProbLevelsNonDprotected
requestedRelLevelsNonDprotected
requestedRespLevelsNonDprotected
reset()Iteratorvirtual
residualModelNonDBayesCalibrationprotected
resize()NonDCalibrationvirtual
resize_communicators(ParLevLIter pl_iter, bool reinit_comms)Iterator
resp_x_to_u_mapping(const Variables &x_vars, const Variables &u_vars, const Response &x_response, Response &u_response)NonDprotectedstatic
respLevelTargetNonDprotected
respLevelTargetReduceNonDprotected
response_array_results()Analyzerinlineprotectedvirtual
response_results() const NonDinlineprotectedvirtual
response_results_active_set(const ActiveSet &set)NonDinlineprotectedvirtual
resultsDBIteratorprotected
resultsNamesIteratorprotected
returns_multiple_points() const Analyzerinlineprotectedvirtual
rnumGeneratorNonDWASABIBayesCalibrationprotected
run(ParLevLIter pl_iter)Iterator
run()Iterator
run_identifier() const Iteratorprotected
sample_to_variables(const Real *sample_vars, Variables &vars)Analyzerprotectedvirtual
samples_to_variables_array(const RealMatrix &sample_matrix, VariablesArray &vars_array)Analyzerprotected
sampling_increment()Iteratorvirtual
sampling_reference(int samples_ref)Iteratorvirtual
sampling_reset(int min_samples, bool all_data_flag, bool stats_flag)Iteratorvirtual
sampling_scheme() const Iteratorvirtual
secondaryACVarMapTargetsIteratorprotected
secondaryADIVarMapTargetsIteratorprotected
secondaryADRVarMapTargetsIteratorprotected
secondaryADSVarMapTargetsIteratorprotected
set_communicators(ParLevLIter pl_iter)Iterator
set_configuration_vars(Model &model, const RealVector &x)NonDCalibrationprotected
set_u_to_x_mapping(const Variables &u_vars, const ActiveSet &u_set, ActiveSet &x_set)NonDprotectedstatic
size()NonDprotected
standardizedSpaceNonDBayesCalibrationprotected
stochExpIteratorNonDBayesCalibrationprotected
sub_iterator_flag(bool si_flag)Iterator
subIteratorFlagIteratorprotected
submethod_enum_to_string(unsigned short submethod_name) const Iterator
subSamplingPeriodNonDBayesCalibrationprotected
summary_output(bool summary_output_flag)Iteratorinline
summaryOutputFlagIteratorprotected
totalLevelRequestsNonDprotected
transform_correlations()NonDinline
transform_model(Model &x_model, Model &u_model, bool truncated_bounds=false, Real bound=10.)NonDprotected
unpack_parameters_buffer(MPIUnpackBuffer &recv_buffer)Iteratorvirtual
unpack_parameters_initialize(MPIUnpackBuffer &recv_buffer)Iteratorvirtual
unpack_results_buffer(MPIUnpackBuffer &recv_buffer, int job_index)Iteratorvirtual
update_aleatory_final_statistics()NonDprotected
update_final_statistics()NonDprotectedvirtual
update_from_model(const Model &model)Analyzerprotectedvirtual
update_local_results(int job_index)Iteratorvirtual
update_model_from_sample(Model &model, const Real *sample_vars)Analyzerprotectedvirtual
update_model_from_variables(Model &model, const Variables &vars)Analyzerprotectedvirtual
update_system_final_statistics()NonDprotected
update_system_final_statistics_gradients()NonDprotected
uses_method() const Iteratorvirtual
variable_transformation()NonDinline
variables_array_results()Analyzerinlineprotectedvirtual
variables_array_to_samples(const VariablesArray &vars_array, RealMatrix &sample_matrix)Analyzerprotected
variables_results() const Analyzerinlineprotectedvirtual
variables_to_sample(const Variables &vars, Real *sample_c_vars)Analyzerprotectedvirtual
variance_based_decomp(int ncont, int ndiscint, int ndiscreal, int num_samples)Analyzerprotected
varianceTypesReadNonDCalibrationprotected
vars_u_to_x_mapping(const Variables &u_vars, Variables &x_vars)NonDinlineprotectedstatic
vars_x_to_u_mapping(const Variables &x_vars, Variables &u_vars)NonDinlineprotectedstatic
vary_pattern(bool pattern_flag)Analyzervirtual
verify_correlation_support(short u_space_type)NonD
~Analyzer()Analyzerinlineprotected
~Iterator()Iteratorvirtual
~NonD()NonDinlineprotected
~NonDBayesCalibration()NonDBayesCalibration
~NonDCalibration()NonDCalibration
~NonDWASABIBayesCalibration()NonDWASABIBayesCalibration